Michael Grobe

Principal Systems Analyst

Pervasive Technology Institute
Research Technologies
Indiana Clinical and Translational Sciences Institute
University Information Technical Services
Indiana University
Office: ICTC 440A Indianapolis, IN
Office Phone: 317-278-6891
Office e-mail: dgrobe@iupui.edu

Personal e-mail address: grobe@ku.edu
Personal web page: people.ku.edu/~grobe
Cell phone:785-218-5252

Here are some possibly useful links related to my work here:

Links to resources related to the Purdue DataBase Tools (aka cceHub tools):
- Tutorial: Setting up a spreadsheet for use with the cceHub DataViewer
- Tutorial: Using the Web form component to build scripts to modify databases
- Tutorial: Using the Web form and DataViewer components for to request user-specified frequency tables/charts, cross-tabs, and regressions
- Putting a Joomla! component into SVN for the development cycle
- Some test links (some require prior authentication to dev1):
  - Test links for dev1.indianactsi.org (the dev system).
  - Test links for dev10.indianactsi.org (the release turnover system).
  - Test links for www.indianactsi.org (the productional system).
SparQL Introduction
CLSD on the Pervasive Technology Institute web site
Pointers on using CLSD
SparQL endpoint on discern
Tomcat development server
Using the NCBI eUtilities via CGI
Making relational data available on the Grid: A survey of methods from CGI to OGSA-DAI
WSRF
- Using WSRF to build workflow scripts: Temp "files" and filters in a Grid environment
- Quick introduction to Web Services and the Web Services Resource Framework
SecondLife links
- PPT slide set: Programming in SecondLife
- Web-based tutorial: Using the Linden Script Language
Some scripts for manipulating genomic data:
Ontologies, RDF, and the Semantic Web
- Ontologies: "What are they?" and "How do they work?"
- Introduction to RDF, Jena, SparQL and the "Semantic Web"
  - SIGUCCS 2009 Proceedings paper
  - SIGUCCS presentation slide set
- Introduction to the Semantic Web and Bio2RDF, the "semantic web atlas of postgenomic knowledge"
- The Vivo Query by Template (VQBT) interface for building SparQL queries and navigating query results, a poster on VQBT, aka the SparQL Navigator (PDF)
- Vivo components for the HubZero/Joomla! platform, a report on the Vivo Mini-grant for the Vivo 2011 Conference (PPT)
- A Purdue DataViewer interface into UFL Vivo data from 2011
- An Introduction to SparQL, with examples using the Gene Ontology, Bio2RDF, and DBpedia (PPT)
Access BIOKDD using SQL, via a Web Service.
Using dbSNP resources
- Using the relational and eUtils interfaces to dbSNP
- Using dbSNP via SQL queries
Using XML::Twig to process XML content
Some 2006 TRANSFAC data.
Some experiments with Spring Roo

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